search

phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
111 stars 25 forks source link

start and end position #176

Closed vappiah closed 1 year ago

vappiah commented 1 year ago

Hi Developers, I need some clarification. When STARAMR returns plasmidfinder result like this START END 7385 7012

Does it mean the hit is found on the reverse strand?

I have attached a screen short of a report which STARAMR generated when I searched my sequences for plasmids Screenshot from 2023-05-19 22-43-28

apetkau commented 1 year ago

@vappiah yes, that's correct. If start is greater than end it means hit is on reverse strand.