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phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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Changing Sensitive to Susceptible in Outputs #183

Closed emarinier closed 1 year ago

emarinier commented 1 year ago

Address #164.

Also note this change (sensitive to susceptible in the help text), which I thought was appropriate, but may be wrong:

        report_group.add_argument('--exclude-negatives', action='store_true', dest='exclude_negatives',
                                  help='Exclude negative results (those susceptible to antimicrobials) [False].',
emarinier commented 1 year ago

This all looks great to me, including the help text change.

Could you add something in CHANGELOG.md about this?

Updated