Closed apetkau closed 1 year ago
There is a column, Required_mut, in the PointFinder database file resistens-overview.txt that lists mutations required to classify as resistant: https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/resistens-overview.txt
resistens-overview.txt
We should add Required_mut to the pointfinder.tsv results from StarAMR (named something like CGE_Required_mut.
pointfinder.tsv
Completed in #196
apetkau
commented
1 year ago apetkau
commented
1 year ago
There is a column, Required_mut, in the PointFinder database file
resistens-overview.txtthat lists mutations required to classify as resistant: https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/resistens-overview.txtWe should add Required_mut to the
pointfinder.tsvresults from StarAMR (named something like CGE_Required_mut.