Add better error message/handling in case of empty input file

phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Apache License 2.0

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Closed apetkau closed 5 years ago

apetkau commented 5 years ago

In case of an empty input (or invalid) file, add a better error message than just a stack trace.

Also, add an option like --ignore-invalid-files to force staramr to skip over invalid input files.

jennifertran commented 5 years ago

Issue resolved. Closing issue.