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phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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Add command line options for Plasmid Finder #39

Closed jennifertran closed 5 years ago

jennifertran commented 5 years ago

There are some command line options for --pointfinder-commit and --resfinder-commit when building the database (https://github.com/phac-nml/staramr#database-build).

We will need to add --plasmidfinder-commit command in the following file: https://github.com/phac-nml/staramr/blob/development/staramr/subcommand/Database.py

jennifertran commented 5 years ago

Resolved