Update documentation for staramr to include plasmidfinder

phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Apache License 2.0

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Closed apetkau closed 5 years ago

apetkau commented 5 years ago

Update the documentation in the README.md to include plasmidfinder. That is, we should add:

[x] - An example of the PlasmidFinder results table and the Detailed_Summary table.
[x] - A description of the columns in these tables.
[x] - Update the tutorial to include desciptions of detecting plasmids.
[x] - Update the usage docs to reflect new command-line parameters for staramr.

jennifertran commented 5 years ago

Merged