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phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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Revert ResFinder/PointFinder default to previous release versions #61

Closed apetkau closed 5 years ago

apetkau commented 5 years ago

Revert ResFinder/PointFinder default databases to previous release versions for this next release. That is, back to versions found in staramr 0.4.0.

My reason for this is our mapping between the AMR gene and drug resistance is only completed for these ResFinder/PointFinder database versions.

This would likely involve disabling support for enterococcus faecalis (https://github.com/phac-nml/staramr/pull/35) since I don't believe this is available in the earlier PointFinder database.

Support will be re-added in a later release.

jennifertran commented 5 years ago

Closing Issue as it's been resolved