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phac-nml
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staramr
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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Database restore and invert BLAST
#15
apetkau
closed
6 years ago
0
Feature/blast tabular
#14
apetkau
closed
6 years ago
0
pointfinder db results DataFrame is None; AttributeError: 'NoneType' object has no attribute 'to_csv'
#13
peterk87
closed
6 years ago
3
WIP:Feature/restore default databases
#12
apetkau
closed
6 years ago
2
Check that input files exist
#11
peterk87
closed
6 years ago
1
Use BLAST Tabular data + pandas
#10
apetkau
closed
6 years ago
1
Defining classes with `attrs` and making use of `namedtuple`
#9
apetkau
closed
4 years ago
2
Make use of `pandas.merge` to merge dataframes for gene drug table
#8
apetkau
closed
4 years ago
2
Auto-fit width of column in Excel spreadsheet
#7
peterk87
closed
6 years ago
3
Make sure lack of match in gene/drug key is not reported as 'Sensitive'
#6
apetkau
closed
6 years ago
1
Limit numerical values to 2 decimals in excel output
#5
apetkau
closed
6 years ago
1
Add gene/drug key supplied by NARMS/CIPARS Molecular Working Group
#4
apetkau
closed
6 years ago
1
Add a method to restore default resfinder/pointfinder databases after update
#3
apetkau
closed
6 years ago
1
Report genomes lacking any AMR genes by default
#2
apetkau
closed
6 years ago
1
Feature/integrate resistance predictions
#1
apetkau
closed
6 years ago
3
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