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pharmai
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plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
http://plip.biotec.tu-dresden.de
GNU General Public License v2.0
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Fixing OverflowError: Python integer -1000 out of bounds for uint32
#158
gmrandazzo
opened
3 weeks ago
1
OverflowError: Python integer -1000 out of bounds for uint32 int32_to_negative(int32) in supplemental.py
#157
gmrandazzo
opened
3 weeks ago
0
Request for Official PLIP User Manual and Python Usage Documentation
#156
Mengo-ye
opened
1 month ago
0
Question about function plip.structure.detection.halogen
#155
ivandon15
opened
3 months ago
0
How to get Information on sidechain/backbone hydrogen bond type in command options?
#154
JeongSooNa
opened
5 months ago
0
Fixes several mistakes in interaction detection with peptide ligands
#153
kalinni
closed
5 months ago
0
Fixes mistakes in waterbridge detection and filtering
#152
kalinni
closed
5 months ago
0
Fixes a mistake in hydrogen bond acceptor identification
#151
kalinni
closed
5 months ago
0
fixes NumPy DeprecationWarning
#150
QY0831
closed
5 months ago
0
Is there any parameters which can control the report results only include the lig interaction within protein instead of some residue interaction in protein?
#149
rflai
closed
6 months ago
10
Incorrectly indexed interacting residues
#148
kaw97
opened
9 months ago
2
Extract interaction specifically for RNA-small molecule ligand and exclude other interactions in the output
#147
JiayiLi21
opened
11 months ago
0
MmCIF support
#146
xrobin
opened
11 months ago
1
Version 2.3.0
#145
fkaiserbio
closed
1 year ago
0
Updates ImageMagick to version 7 and makes its use platform independent
#144
kalinni
closed
1 year ago
3
conf.NOHYDRO and aromatics
#143
matteoferla
opened
1 year ago
0
The ligand structure is not visible.
#142
Tangbbmc
opened
1 year ago
0
supplemental.py:90: RuntimeWarning: invalid value encountered in arccos
#141
MXC66ai
opened
1 year ago
0
Option not to add whitespace after trimming
#140
baoilleach
opened
1 year ago
0
Generated RST file missing blank line after section titles
#139
baoilleach
opened
1 year ago
0
Calculate and report interactions for just one amino acid residue
#138
cesaravila79
opened
1 year ago
0
Segmentation error with pdb files:
#137
sgrannem
opened
1 year ago
1
<< PLIP took forever >>
#136
icamps
opened
1 year ago
0
pymol.CmdException: Error: Object not found
#135
Le-Phung-Hien
opened
1 year ago
0
Batch mode for protein-peptide
#134
victorconan
opened
2 years ago
0
How to go about finding interacting Amino Acid Residues of ~1 billion compounds (In PDBQT)
#133
eschoo
opened
2 years ago
1
Traceback (most recent call last): File "/plip/plip/plipcmd.py", line 16, in <module> from plip.basic import config, logger ModuleNotFoundError: No module named 'plip'
#132
MarcAmil30
opened
2 years ago
1
python module stuck in loop with some pdb files
#131
ydzdfci
opened
2 years ago
0
Openbabel package name conflict
#130
klsarathk
opened
2 years ago
2
XML filename shouldn't be `report.xml`
#129
pslacerda
opened
2 years ago
2
Interpretation of results
#128
JinyuanSun
closed
1 year ago
3
fixes salt bridge detection for nucleic acid receptors
#127
sungekim
closed
2 years ago
2
Fixes a bug when using --nofix
#126
zrt
closed
2 years ago
1
Add explanation for OpenBabel atom groups to README
#125
fkaiserbio
opened
2 years ago
0
Segfault again...
#124
DSuveges
closed
2 years ago
6
Plip shows same Hydrogen Bond twice (Donor and Acceptor switched)
#123
PhiCMS
opened
2 years ago
0
Water bridge water_angle
#122
bernieleecy
opened
2 years ago
3
Is there a bug on waterbridge atom index?
#121
freeenergylab
opened
2 years ago
1
Fixes PDB file correction for multi-model structures
#120
kalinni
closed
2 years ago
1
interactions between protein and ligand only ??
#119
momarzouksobeh
closed
2 years ago
3
Salt Bridge recognised although it should not
#118
i2nico
opened
2 years ago
1
-SO2 in the ligand group makes interaction (Salt bridge/Hbond) with protein but not captured by plip.
#117
aniketsh
opened
3 years ago
4
Interactions between cocrystallized cofactor and ligand
#116
michabirklbauer
opened
3 years ago
1
Duplicate lines of code: sorted_main = sorted(main, key=lambda x: (x[1], x[2]))
#115
koyurion
closed
1 year ago
1
Specific handling of alternative locations
#114
koyurion
opened
3 years ago
2
HET from custom .pdb file created in PyMOL not parsed correctly by plip
#113
fabioatuib
opened
3 years ago
6
Version 2.2.2
#112
fkaiserbio
closed
3 years ago
0
Unicode Encoding Error (UnicodeEncodeError) on CentOS with Docker
#111
eblen
closed
3 years ago
1
Development
#110
fkaiserbio
closed
3 years ago
3
PyMol visualizations not generated
#109
MiloszGrabski
opened
3 years ago
5
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