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pharmaverse / admiral.test

Test SDTM data for use with admiral
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TU, TR, and RS test data needed #2

Closed rossfarrugia closed 2 years ago

rossfarrugia commented 2 years ago

See pharmaverse/admiral#827 - need to use CDISC pilot DM data to create realistic synthetic data for oncology SDTM domains (TU, TR, and RS) in {admiral.test} to allow {admiral.onco} oncology specific package extension development of Onco efficacy ADaMs (ADRS and ADTTE). Once we have this we could also share back with CDISC in case they want to add to their pilot data repository.

Note that personal data shouldn't be used for testing even if anonymised. One of my colleagues co-authored this useful paper recently on the topic: https://link.springer.com/article/10.1007/s44163-021-00016-y - it also gives lots of great advice on methods around synthetic data generation.

rossfarrugia commented 2 years ago

Gopi from Astellas has agreed to take this on and I'll assign him once accepted as a member of the org

Gopi2345 commented 2 years ago

Thank you Ross.

Gopi2345 commented 2 years ago

@thomas-neitmann , @bms63 , @rossfarrugia , @bundfussr Added seed and variable labels. I do not know how to add label to the dataset. Any suggestions?

bundfussr commented 2 years ago

I think

attr(tr, "label") <- "Tumor Results"

should work.

Gopi2345 commented 2 years ago

@bundfussr, Thank you, I updated tu, tr and rs scripts by adding dataset labels.