pharmaverse / admiralpeds

Admiral Package Extension for Pediatric Clinical Trials
https://pharmaverse.github.io/admiralpeds/
Apache License 2.0
13 stars 3 forks source link

Closes #73 improve derive_interp_records #76

Closed Fanny-Gautier closed 3 months ago

Fanny-Gautier commented 4 months ago

Thank you for your Pull Request! We have developed this task checklist from the Development Process Guide to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral codebase remains robust and consistent.

Please check off each taskbox as an acknowledgment that you completed the task or check off that it is not relevant to your Pull Request. This checklist is part of the Github Action workflows and the Pull Request will not be merged into the main branch until you have checked off each task.

github-actions[bot] commented 4 months ago

Code Coverage

Package Line Rate Health
admiralpeds 78%
Summary 78% (153 / 195)
Fanny-Gautier commented 4 months ago

@bundfussr , Could you please suggest how to get ride of the following error ? Thanks. image

When I run lintr in my session I don't get any error. image

It's well added in admiralpeds-package.R, and NAMESPACE image image and Imported in DESCRIPTION

image

rossfarrugia commented 4 months ago

@Fanny-Gautier as per discussion on the other PR please also make any vignette updates as a result of these template changes so both remain consistent in the same PR for ease of review, and you'll need to merge latest main branch (resolving any conflicts)

Fanny-Gautier commented 4 months ago

@bundfussr , Could you please suggest how to get ride of the following error ? Thanks. image

When I run lintr in my session I don't get any error. image

It's well added in admiralpeds-package.R, and NAMESPACE image image and Imported in DESCRIPTION

image

Hi @rossfarrugia , could you please suggest how to fixe this error that I can finish this PR and assign the reviewers? thanks

rossfarrugia commented 4 months ago

@bundfuss i need your advice for the above please. i tried a few things as you can see in the commits above and don't get why lintr fails here. R CMD check is fine so what Fanny has added seems fine to me.

@Fanny-Gautier in the meantime feel free to add reviewers and mark as ready as it looks to me like an error on the CI side not with anything you've done. We use the same function in admiralroche in same way as how you've added and our gitlab CI doesn't ever have a problem.

bundfussr commented 4 months ago

@bundfuss i need your advice for the above please. i tried a few things as you can see in the commits above and don't get why lintr fails here. R CMD check is fine so what Fanny has added seems fine to me.

@rossfarrugia , yes, that's very strange. Could we clear the cache and rerun the workflow? Unfortunately, I don't have the rights to clear the cache.

rossfarrugia commented 4 months ago

@rossfarrugia , yes, that's very strange. Could we clear the cache and rerun the workflow? Unfortunately, I don't have the rights to clear the cache.

no luck unfortunately - i've asked Dinakar's team if any ideas

Fanny-Gautier commented 4 months ago

🎉🎉 Thanks @bundfussr for the solution and update !! Good to know that the dependencies must be defined !

Fanny-Gautier commented 4 months ago

Due to system issue (login fails due to worldwide Microsoft issue), I haven't been able to progress much on the new comments. Hoping it's working again on Monday.

Fanny-Gautier commented 4 months ago

Having system issue again, I raised a Ticket to my IT support... @bundfussr could you please review what I have already committed today and let me know whether this is good enough ? Thanks