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pharmaverse / sdtm.oak

An EDC and Data Standard agnostic SDTM data transformation engine that automates the transformation of raw clinical data in ODM format to SDTM based on standard mapping algorithms
https://pharmaverse.github.io/sdtm.oak/
Apache License 2.0
25 stars 7 forks source link

Documentation: Template R code #17

Closed rammprasad closed 8 months ago

rammprasad commented 11 months ago

Please select a category the issue is focused on?

Developer Guides

Let us know where something needs a refresh or put your idea here!

Develop a Vignette to demonstrate how the {sdtm.oak} functions and algorithms can be used to create SDTM domains.

joybvictor commented 8 months ago

What library needs to be installed to use the functions read_raw_data_csv, read_sdtm_spec_csv, and read_study_ct_csv. ? I'm quite new to GitHub and not sure if I'm doing it correctly.

ramiromagno commented 8 months ago

Hi @joybvictor ,

Those functions are to be understood as pseudocode. Their implementation is actually not provided as of yet. You can nonetheless read the CSVs with any importer, e.g. read.csv() or readr::read_csv(). I hope that helps.

joybvictor commented 8 months ago

Understood. I've already loaded the library(readxl), but I want to confirm that I'm on the right path.