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pharmaverse / sdtm.oak

An EDC and Data Standard agnostic SDTM data transformation engine that automates the transformation of raw clinical data in ODM format to SDTM based on standard mapping algorithms
https://pharmaverse.github.io/sdtm.oak/
Apache License 2.0
22 stars 6 forks source link

Fix Test Coverage and Roxygen workflows #35

Closed ramiromagno closed 5 months ago

ramiromagno commented 6 months ago

What happened?

Hello @galachad:

I am just adding this issue so that it is not forgotten.

We need to fix the Test Coverage and Roxygen workflows that are seemingly failing for reasons unrelated to {sdtm.oak} R source code.

See, for example:

The downloaded source packages are in
    ‘/tmp/RtmpA3tOeq/downloaded_packages’
Error in devtools::install(force = TRUE, dependencies = TRUE) : 
  lazy-load database '/renv/lib/R-4.3/x86_64-pc-linux-gnu/pkgbuild/R/pkgbuild.rdb' is corrupt
In addition: Warning message:
In devtools::install(force = TRUE, dependencies = TRUE) :
  internal error -3 in R_decompress1
Execution halted
Error: Process completed with exit code 1.

Session Information

No response

Reproducible Example

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