Closed sarabodach closed 1 month ago
> AE <- data.frame( + USUBJID = 1:4, + AEDTHDTC = rep("2020-01-01", 4), + AEDECOD = 1:4, + AESTDTC = 1:4, + AEOUT = c("FATAL", "UNKNOWN", " ", NA), + AESPID = "FORMNAME-R:19/L:19XXXX", + stringsAsFactors = FALSE + ) > AE USUBJID AEDTHDTC AEDECOD AESTDTC AEOUT AESPID 1 1 2020-01-01 1 1 FATAL FORMNAME-R:19/L:19XXXX 2 2 2020-01-01 2 2 UNKNOWN FORMNAME-R:19/L:19XXXX 3 3 2020-01-01 3 3 FORMNAME-R:19/L:19XXXX 4 4 2020-01-01 4 4 <NA> FORMNAME-R:19/L:19XXXX > check_ae_aeout(AE) [1] FALSE attr(,"msg") [1] "AEs with inconsistent AEDTHDTC and AEOUT found." attr(,"data") USUBJID AEDTHDTC AEOUT 1 2 2020-01-01 UNKNOWN 2 3 2020-01-01
Only USUBJID 2 and 3 get flagged. USUBJID 4 does not get flagged because of NA.
https://github.com/pharmaverse/sdtmchecks/blob/bfc26cd90324ace15927bb2f14bee2e1acc7fb68/R/check_ae_aeout.R#L53
Expand logic to | is_sas_na(AE$AEOUT)
| is_sas_na(AE$AEOUT)
Only USUBJID 2 and 3 get flagged. USUBJID 4 does not get flagged because of NA.
https://github.com/pharmaverse/sdtmchecks/blob/bfc26cd90324ace15927bb2f14bee2e1acc7fb68/R/check_ae_aeout.R#L53
Expand logic to
| is_sas_na(AE$AEOUT)