This code uses SNPs/INDELs called against one set of minced contigs (one set of the phase blocks and collapsed regions). The code first processes the FALCON-Phase binary code output and the VCF to generate a flat text file.
The summary script can then be run on the flat text file to get human readable results.
zeeev
commented
6 years ago
This code uses SNPs/INDELs called against one set of minced contigs (one set of the phase blocks and collapsed regions). The code first processes the FALCON-Phase binary code output and the VCF to generate a flat text file.
The summary script can then be run on the flat text file to get human readable results.