shawnpg
commented
5 years ago Hi,
Thanks for reporting this issue. It is likely this has something to do with the environment, and that we will be able to detect and recover from this issue. The failure appears to be in versioneer.py, which is redistributed with hic_qc. It might be a problem with git not being installed on the machine from how it's failing. Do you know if git is installed on the HPC?
Thanks!
maximilianpress
Hi,
I followed the instructions to install hic_qc on HPC with my own account. The error message is as following. I know nothing about Python. Could anyone help me solve this?
Thanks!
(hic_qc) /home/lson1234/tools/hic_qc $ python setup.py install --user usage: git rev-list [OPTION]... [ -- paths... ]
limiting output:
--max-count=nr
--max-age=epoch
--min-age=epoch
--sparse
--no-merges
--remove-empty
--all
--branches
--tags
--remotes
--stdin
--quiet
ordering output:
--topo-order
--date-order
--reverse
formatting output:
--parents
--children
--objects | --objects-edge
--unpacked
--header | --pretty
--abbrev=nr | --no-abbrev
--abbrev-commit
--left-right
special purpose:
--bisect
--bisect-vars
--bisect-all
Traceback (most recent call last):
File "setup.py", line 6, in
version=versioneer.get_version(),
File "/home/lson1234/tools/hic_qc/versioneer.py", li ne 1480, in get_version
return get_versions()["version"]
File "/home/lson1234/tools/hic_qc/versioneer.py", li ne 1453, in get_versions
pieces = from_vcs_f(cfg.tag_prefix, root, verbose)
File "/home/lson1234/tools/hic_qc/versioneer.py", li ne 1110, in git_pieces_from_vcs
pieces["distance"] = int(count_out) # total number of commits
TypeError: int() argument must be a string, a bytes-like object or a number, not 'NoneType'