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phasegenomics / hic_qc

A (very) simple script to QC Hi-C data.
GNU Affero General Public License v3.0
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Fix bwa mem2 #69

Closed shawnpg closed 3 years ago

shawnpg commented 3 years ago

Update hic_qc to support bwa-mem2 in response to a user-reported error. Also fix a bug when samblaster was not used, which was uncovered during the process of making this fix.

bnelsj commented 3 years ago

Code looks good, but a test or two here would be great.

bnelsj commented 3 years ago

Do we want the PR to target dev instead of master?

shawnpg commented 3 years ago

Thanks! Unit tests added and PR rebased to dev