phbradley TCRdock issues

phbradley / TCRdock

python tools for TCR:peptide-MHC modeling and analysis

MIT License

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issues

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Importing TCR Sequences Without V, J, CDR3 Names for Predicted PAE Binding Prediction

#21 kanyuanhao opened 4 months ago
2
Using Cryo-EM structures in TCRdock

#20 andreas-wilm opened 5 months ago
0
`run_prediction.py` output PDB files do not contain multiple chains

#19 kamurani opened 5 months ago
0
`.pdb` files in model output should have `pLDDT` scores stored in `b_factor` column

#18 kamurani opened 5 months ago
1
`run_prediction.py` should have an `--output-dir` option

#17 kamurani opened 5 months ago
0
Fix `BiopythonDeprecationWarning` during sequence alignment

#16 kamurani opened 5 months ago
0
`BiopythonDeprecationWarning` in `tcrdock/sequtil.py`

#15 kamurani opened 5 months ago
2
how to run "run_prediction.py" in a alphafold docker instance?

#14 patycake57 opened 7 months ago
7
Add Dockerfile for increased reusability

#13 eliasball closed 7 months ago
1
"Conda env" is not working

#12 HonglanLi opened 9 months ago
2
Which parameters to use?

#11 eliasball opened 10 months ago
0
Decoy discrimination benchmark using finetuned model

#10 junhaobearxiong opened 10 months ago
3
Content of pdb files before and after running docking

#9 Florian411 closed 10 months ago
2
CDR RSME

#8 eleven-0325 closed 11 months ago
2
Parallel setup_for_alphafold.py ?

#7 StysPaul opened 1 year ago
5
Internal alphafold library issue

#6 a3609640 opened 1 year ago
1
Finetuned weights

#5 barthelemymp closed 1 year ago
2
TypeError in run_prediction.py

#4 InfoSuresh closed 1 year ago
2
Documentation of output generated by run_prediction.py

#3 Florian411 closed 1 year ago
2
How to calculate binding score from alphafold-prediction?

#2 linusbiostat closed 1 year ago
5
-

#1 dstcr closed 2 years ago
0