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phbradley / alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
Apache License 2.0
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Alphafold changes & install #5

Open gezmi opened 1 year ago

gezmi commented 1 year ago

Hi,

These seems to be like a great tool and I was looking into installing it. I have 2 questions:

  1. Are the alphafold changes already in the code that is in the alphafold directory?
  2. If we have a running installation with localcolabfold and we clone it, downloading the weights and exchanging the alphafold directory in it (or patching the relevant files) should in theory work without further adjustements?
  3. Do you plan to develop a colab notebook for running this tool?

Thank you!

phbradley commented 1 year ago

Hi there, I'm really sorry for the slow reply-- I must have missed the notification when this issue was opened!

  1. Yes, the changes are already made in the code in alphafold directory.
  2. My prediction would be yes, it should in theory work.
  3. This is on the to-do list but there are other things ahead of it, so no ETA. Sorry for that!

Take care, Phil