phbradley / alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
Apache License 2.0
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code example for generating target_to_template_alignstring #9

Open DaHenz opened 1 year ago

DaHenz commented 1 year ago

Hi, I'm applying your fine-tuned model to predict the protein-peptides binding pairs in our lab. So, alignment information is required. I still need clarification about getting the mapping strings after reading the method part of the paper. A code example should greatly help people who want to use it for local sequences and models.

Many thanks for this work and anyone could provide any suggestion on this question!