sschattgen
commented
3 years ago run_conga.py edited to skip sc.logging.print_versions() for now.
Closed sschattgen closed 3 years ago
sschattgen
commented
3 years ago run_conga.py edited to skip sc.logging.print_versions() for now.
Setting up the conda environment configuration from the README with Python 3.6 is now giving the following error when using the run_conga.py script.
`Traceback (most recent call last): File "/Users/sschattg/opt/anaconda3/envs/conga_env_36/lib/python3.6/site-packages/sinfo/main.py", line 195, in sinfo mod_version = _find_version(mod.version) AttributeError: module 'importlib_metadata' has no attribute 'version'
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/Users/sschattg/conga/scripts/run_conga.py", line 155, in
sc.logging.print_versions() # goes to stdout
File "/Users/sschattg/opt/anaconda3/envs/conga_env_36/lib/python3.6/site-packages/scanpy/logging.py", line 161, in print_versions
sinfo(dependencies=True)
File "/Users/sschattg/opt/anaconda3/envs/conga_env_36/lib/python3.6/site-packages/sinfo/main.py", line 198, in sinfo
mod_version = _find_version(mod.version)
File "/Users/sschattg/opt/anaconda3/envs/conga_env_36/lib/python3.6/site-packages/sinfo/main.py", line 42, in _find_version
return mod_version_attr()
TypeError: version() missing 1 required positional argument: 'distribution_name'`