Open s2hui opened 2 years ago
Hi there, Sorry for my slow reply (traveling). Take a look at the new answer in the CoNGA README FAQ (at the end), and see if that answers your query. Happy to help if anything's not clear or you run into trouble. Take care, PHil
Hello,
Thanks for this useful tool, I am using it quite alot and wanted to run the following feature where I can plot batch information to the logo plots. Specifically, I am running conga via the python script run_conga.py. I read in the documentation within the script that there is a flag called --batch_keys with the following notes:
I also read that the batch info should reside within
adata.obsm[<batch_key>]
, but what is the best way to add this info to the AnnData object?Thanks for your help! @s2hui