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phbradley / conga

Clonotype Neighbor Graph Analysis
MIT License
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Save plots as svg #36

Closed cr2106 closed 2 years ago

cr2106 commented 2 years ago

Hello,

would it be possible to save the graph-vs-graph logos plot as svg instead of png?

Thank you for your help

sschattgen commented 2 years ago

Sorry for the delay getting to your issue, and maybe you've found a solution already, but I pushed a commit to the bcr developmental branch that should help. Passing save_pdf = True to conga.plotting.make_graph_vs_graph_logos conga.plotting.make_tcr_clumping_plots will write the plots to both png and pdf format. If you really need SVG format you could easily tweak this to get that instead. As a word of caution, you should expect the pdf files to be large file sizes.

Cheers, Stefan

https://github.com/phbradley/conga/commit/05674918f37545976ae3ad66e4f55103043b5b8f