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phbradley / conga

Clonotype Neighbor Graph Analysis
MIT License
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Plot epitope specificity on GEX umap #48

Open cr2106 opened 1 year ago

cr2106 commented 1 year ago

Hello,

would it be possible to plot TCR matching to database on GEX umap?

Thank you for your help!

phbradley commented 1 year ago

Hi there, Thanks for trying conga! The function conga.plotting.make_tcr_db_match_plot does just that. It gets called here

https://github.com/phbradley/conga/blob/master/scripts/run_conga.py#L800

in the run_conga.py script, and it's defined here:

https://github.com/phbradley/conga/blob/master/conga/plotting.py#L1811

Let me know if that's not what you're looking for. Take care, Phil