Great package you've set up here!
I have an integrated 5'GEX single cell RNAseq and TCRseq dataset.
I followed the preprocessing steps in the Seurat_to_Conga.ipynb workflow, then used something like run_conga.py --restart --all
I have my own GEX cluster assignments for my data. How do I incorporate that into my current workflow?
yls2g13
commented
1 month ago
Great package you've set up here! I have an integrated 5'GEX single cell RNAseq and TCRseq dataset.
I followed the preprocessing steps in the Seurat_to_Conga.ipynb workflow, then used something like
run_conga.py --restart --allI have my own GEX cluster assignments for my data. How do I incorporate that into my current workflow?