search

phbradley / conga

Clonotype Neighbor Graph Analysis
MIT License
79 stars 18 forks source link

Where is the ‘Notes’ in ipynb? #71

Closed winglet0996 closed 2 weeks ago

winglet0996 commented 2 weeks ago

I am following your fancy_conga_pipeline_with_batches_and_gammadelta_tcrs tutorial. I noticed in the command cells there are 'Notes' # 1,2,3,4... , but they seem not included in the notebook. I wonder where I can find them? image

Thanks for developing such a fantastic tool.

phbradley commented 2 weeks ago

Hi there, Thanks for your interest and kind words! Sorry that wasn't clear. Those refer to notes in this paper (attached):

Schattgen, S. A., Hazelton, W. D., Thomas, P. G., & Bradley, P. (2022). Multimodal T Cell Analysis with CoNGA. Methods in Molecular Biology , 2574, 367–388.

Schattgen et al. 2022 - Multimodal T Cell Analysis with CoNGA.pdf