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phbradley / tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
MIT License
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text format cluster output for make_tall_trees.py #36

Open BioLaoXu opened 4 years ago

BioLaoXu commented 4 years ago

Hi!dear team, Using the tcr-dist plug-in find a surprise result that i really care about,especially the result of make_tall_trees.py,but make_tall_trees.py just output a figure output,as shown below: 图片

in this fingure , the seq-logo sub-cluster result in the left is really i want , Can this result be output to text cluster by cluster? Looking forward to your reply,thanks

phbradley commented 4 years ago

Hi there @xf78 thanks for your interest in tcr-dist! Can you clarify-- what information from the boxed image would you like? Is it the actual clones that are present in those boxed clusters whose logos are being shown? Or the CDR3 amino acid frequencies? Or the v-gene frequencies?

BioLaoXu commented 4 years ago

Thank you for your reply@phbradley, yes, those showing logos subcluster present actual clones ,so i want each showing logos subcluster's information,especially, which TCR ids included in each showing logos subcluster,can output this information to text file,just like below(just an example): 图片 Looking forward to your reply,thanks!