search

phbradley / tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
MIT License
79 stars 36 forks source link

Bad CPU type #38

Open poorvam opened 4 years ago

poorvam commented 4 years ago

I am using Python 2.7 under conda environment to run TCRdist on my Mac Catalina 10.15.4 64bit machine. I am able to run "python setup.py" but when i use "python run_basic_analysis.py" i get below message

**/bioinformatics_tools/tcr-dist-master/external/blast-2.2.16/bin/formatdb -p F -i **/bioinformatics_tools/tcr-dist-master/db/alphabeta_db.tsv_files/blast_dbs/nucseq_human_A_V.fasta sh: /bioinformatics_tools/tcr-dist-master/external/blast-2.2.16/bin/formatdb: Bad CPU type in executable blast db creation failed!

Also i couldn't install sklearn as it only for python3 and above.

Can you please help fix this problem?

phbradley commented 4 years ago

Hi poorvam sorry to hear that you are running into these issues. I'm afraid I don't have any insight into this but I am happy to report that a new version of tcrdist, coded in python3, is going to be released very shortly (within the next few weeks). We will post an announcement on the main page for this (the old) tcr-dist repo. Good luck!

poorvam commented 4 years ago

Thank you Phil. I will wait for the new version of tcrdist.

JinChengneng commented 3 years ago

Hi poorvam sorry to hear that you are running into these issues. I'm afraid I don't have any insight into this but I am happy to report that a new version of tcrdist, coded in python3, is going to be released very shortly (within the next few weeks). We will post an announcement on the main page for this (the old) tcr-dist repo. Good luck!

Hi Phil, thanks a lot for your contribution to TCRdist. Is there any news about the new version of TCRdist? Thank you in advance for any replies.

phbradley commented 3 years ago

Hi there, yes thanks for checking in. Take a look at https://github.com/kmayerb/tcrdist3 It's not exactly the same functionality but may have what you are looking for. Take care, Phil