Added variant info according to the MME schema. - Githubissues

phenopackets / phenopacket-reference-implementation

Reference java implementation for phenopackets

BSD 3-Clause "New" or "Revised" License

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Added variant info according to the MME schema. #51

Closed tudorgroza closed 8 years ago

cmungall commented 8 years ago

Merging in as a starting point, but let's follow-up on https://github.com/phenopackets/phenopacket-format/issues/10 this may be refactored

Particularly

we should abstract some of the genomic location info up to a more generic class that can be used for gene etc. Also to allow the same variant to have positions on >1 assembly
exonId seems overly specific. If we want to model intersection with and effect on genomic entities then consider a more sophisticated model. Presumably cardinality > 1 here?
same with isoform,