phenopackets / phenopacket-tools

An app and library for building, conversion, and validation of GA4GH Phenopackets.
http://phenopackets.org/phenopacket-tools/stable/
GNU General Public License v3.0
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Implement organ systems validator #117

Closed ielis closed 1 year ago

ielis commented 1 year ago

Addresses the last point of #73

Add an organ system validator that checks if each phenopacket or family/cohort member have annotation for provided organ system represented by a top-level HPO term (e.g. Abnormality of limbs). The annotation comprises either one or more observed descendants (e.g. Arachnodactyly), or excluded top-level HPO term (NOT Abnormality of limbs).