Allow to perform simple phenopacket sanitation

phenopackets / phenopacket-tools

An app and library for building, conversion, and validation of GA4GH Phenopackets.

GNU General Public License v3.0

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Open ielis opened 11 months ago

ielis commented 11 months ago

Allow to perform simple sanitation on a phenopacket:

replace obsolete HPO term IDs with the current IDs based on the provided ontology. Refuse to work if the provided ontology is older
remove phenotypic feature duplicates
remove ancestors of the present features and descendants of the excluded features