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phenopackets / phenopacket-tools

An app and library for building, conversion, and validation of GA4GH Phenopackets.
http://phenopackets.org/phenopacket-tools/stable/
GNU General Public License v3.0
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phenopacket-examples w/ error message #65

Closed mbaudis closed 1 year ago

mbaudis commented 2 years ago

There is an Invalid type url found: error message:

pfx-tools examples -o ~/tests/phenopacket-examples
Invalid type url found:

... but the following examples are being produced (didn't check their completeness...):

bethleham-myopathy.json         retinoblastoma.yml
bethleham-myopathy.yml          squamous-cell-esophageal-carcinoma.json
covid.json              squamous-cell-esophageal-carcinoma.yml
covid.yml               thrombocytopenia2.json
marfan.json             thrombocytopenia2.yml
marfan.yml              urothelial-cancer.json
nemalineMyopathy.json           urothelial-cancer.yml
nemalineMyopathy.yml
pnrobinson commented 2 years ago

I cannot reproduce this error. Can you provide more details (please use latest develop version)

pnrobinson commented 1 year ago

I think this has been dealt with, the CLI is now running smoothly. Please try the latest version and re-open if there are still problems.