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phenopackets / pxftools

A command line utility for operating over Phenotype eXchange Format (PXF) files.
BSD 3-Clause "New" or "Revised" License
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Command for updating obsolete ontology terms #4

Open balhoff opened 8 years ago

balhoff commented 8 years ago

Should the ontologies be provided on the command line? Obtained automatically somehow?

cmungall commented 8 years ago

Good q. Let's go with command line for now, but I imagine later some kind of registry mechanism

Also assuming we're loading the full ontology in memory with the owlapi (as opposed to services). To allow reasoning etc

On 7 Apr 2016, at 7:40, Jim Balhoff wrote:

Should the ontologies be provided on the command line? Obtained automatically somehow?

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