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phenoscape
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Phenex
Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.
http://phenex.phenoscape.org/
MIT License
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sort columns in consistency review panel
#52
wdahdul
opened
11 years ago
0
Consistency panel
#51
balhoff
closed
11 years ago
0
add consistency report: where GO-Biological Process entities require PATO:process term
#50
wdahdul
closed
11 years ago
1
add consistency report: where Monadic qualities also have a Related entity
#49
wdahdul
closed
11 years ago
1
add consistency report: - where Relational qualities are missing Related entities
#48
wdahdul
closed
11 years ago
1
updated terms in red font
#47
wdahdul
opened
11 years ago
0
Phenex cannot start without access to BioPortal web service
#46
balhoff
opened
11 years ago
0
annotation checker interface enhancements
#45
wdahdul
closed
11 years ago
1
Excel export missing rows
#44
wdahdul
closed
11 years ago
1
Relation missing from post-comp field
#43
wdahdul
closed
11 years ago
1
Resize ontology drop-down menus (Windows)
#42
balhoff
opened
11 years ago
0
Template-based EQ entry interfaces
#41
balhoff
opened
11 years ago
0
Enforce 2nd entity for relational qualities
#40
balhoff
closed
11 years ago
1
cell editing and opening new file
#39
balhoff
opened
11 years ago
0
start new file
#38
balhoff
opened
11 years ago
0
add About panel
#37
balhoff
opened
11 years ago
0
starting up Phenex in Windows
#36
balhoff
opened
11 years ago
13
copy and paste menu in character and states
#35
balhoff
opened
11 years ago
0
tabbing feature in all panels
#34
balhoff
opened
11 years ago
0
Divide Phenex code base into library and GUI application jars
#33
balhoff
opened
11 years ago
0
Dataset tab text box behavior
#32
balhoff
closed
11 years ago
1
enforce: GO-Biological Process entities require PATO:process terms
#31
balhoff
closed
11 years ago
3
report on different parent qualities between states of a character
#30
balhoff
closed
11 years ago
0
add consistency report: non-nested post-compositions
#29
balhoff
closed
11 years ago
1
add consistency report: missing character state annotations
#28
balhoff
closed
11 years ago
0
add consistency report: characters missing either Entity or Quality
#27
balhoff
closed
11 years ago
0
add cell-specific annotation features
#26
balhoff
opened
11 years ago
0
Lose row selection when saving in Phenex
#25
balhoff
opened
11 years ago
0
Phenex temporarily freezing
#24
wdahdul
closed
11 years ago
2
Polymorphism
#23
balhoff
closed
11 years ago
2
edit/enter polymorphisms in matrix
#22
balhoff
closed
11 years ago
1
'null' in post-comp
#21
wdahdul
closed
10 years ago
4
Orb prototype
#20
balhoff
closed
11 years ago
0
Update Quaqua library for Mountain Lion
#19
balhoff
closed
11 years ago
4
Remove hyperlinks from Excel export document
#18
wdahdul
closed
11 years ago
2
Excel export bug
#17
wdahdul
closed
11 years ago
1
Cancel button bug in import nexus feature
#16
wdahdul
closed
11 years ago
1
missing terms in quality field
#15
wdahdul
closed
11 years ago
2
relationship list in post-comp
#14
alex-dececchi
closed
11 years ago
1
ORB new term request panel
#13
wdahdul
closed
11 years ago
2
Freezing panels
#12
wdahdul
closed
11 years ago
3
Matrix row editing enhancements
#11
balhoff
opened
11 years ago
0
Additional free text column for Characters panel
#10
balhoff
closed
11 years ago
1
Preliminary CharaParser support
#9
balhoff
closed
11 years ago
0
support for polymorphic states
#8
balhoff
closed
11 years ago
1
Update default ontology configuration to use phenoscape-anatomy and VTO
#7
balhoff
closed
11 years ago
1
Comment field for specimens
#6
balhoff
closed
11 years ago
1
Fix outdated documentation for phenotype encoding in NeXML
#5
hlapp
opened
12 years ago
0
record ontology version identifiers within NeXML
#4
balhoff
opened
12 years ago
0
Removed space.
#3
balhoff
closed
12 years ago
0
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