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phenoscape / pipeline

Build pipeline for the Phenoscape Knowledgebase
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Add relation graphs #125

Open balhoff opened 4 years ago

balhoff commented 4 years ago

It would be useful to compute existential relation graphs for the core bio-ontologies. Some background is here: https://github.com/NCI-Thesaurus/thesaurus-obo-edition/wiki/NCIt-graph-queries

I have a little badly documented tool for computing this: https://github.com/NCI-Thesaurus/ncit-utils

Here's an example: https://github.com/NCATS-Tangerine/ubergraph/blob/e3da8808db424f2009944b54f0c04d5aacac0eb7/Makefile#L25-L29

balhoff commented 3 years ago

At the same time, we should remove generation of DOS-DP-based "property classes", e.g. https://github.com/phenoscape/pipeline/blob/ebcb7bee42d0656351ffc0941a9397a76a9e8d25/Makefile#L268-L276

We don't want to include these in the output.

However, we do want tbox classes from Phenoscape data (NeXML files).

balhoff commented 3 years ago

Something we need to make sure we do before closing this issue: