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phenoscape
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pipeline
Build pipeline for the Phenoscape Knowledgebase
MIT License
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Revert Phenoscape vocab IRI.
#176
balhoff
closed
4 years ago
0
To create tbox, use removal of abox approach.
#175
balhoff
closed
4 years ago
0
Updated 'inheres in' to correct IRI.
#174
balhoff
closed
4 years ago
0
Export label annotations in phenex-tbox.ofn
#173
balhoff
closed
4 years ago
0
Don’t restrict on particular gene class. Bring in synonyms and types.
#172
balhoff
closed
4 years ago
0
Update docker image version
#171
Shalsh23
closed
4 years ago
0
Issue 169 bug fix
#170
Shalsh23
closed
4 years ago
0
Downloading data repository doesn't work
#169
balhoff
closed
4 years ago
3
Fix problem with docker stanza
#168
balhoff
closed
4 years ago
0
Use pipeline-tools; remove unused lines.
#167
balhoff
closed
4 years ago
0
Update path to regression script
#166
Shalsh23
closed
4 years ago
0
Update documentation about docker image
#165
Shalsh23
closed
4 years ago
2
Add script to run docker image for pipeline-tools
#164
Shalsh23
closed
4 years ago
9
Fix docker image reference
#163
balhoff
closed
4 years ago
0
Update with the new mgislim url
#162
Shalsh23
closed
4 years ago
0
Monarch has changed this filename
#161
Shalsh23
closed
4 years ago
0
Issue 157 107 jenkins docker
#160
Shalsh23
closed
4 years ago
0
Some fixes to dockerfile
#159
Shalsh23
closed
4 years ago
0
Merge jenkinsfile
#158
Shalsh23
closed
4 years ago
0
Set up jenkins pipeline
#157
Shalsh23
closed
4 years ago
1
Add gene-taxon triple to the data
#156
Shalsh23
closed
4 years ago
0
Extract gene taxon from Monarch files
#155
balhoff
closed
4 years ago
0
Move from IC to Jaccard for semantic similarity profile scores
#154
wdahdul
opened
4 years ago
0
Import other vertebrate phenotype data from Monarch
#153
wdahdul
opened
4 years ago
0
Issue 151 extract monarch types labels
#152
Shalsh23
closed
4 years ago
2
Extract types and labels from full Monarch datasets
#151
balhoff
closed
4 years ago
0
Insert build time into db
#150
Shalsh23
closed
4 years ago
0
Fix monarch links, python lib
#149
Shalsh23
closed
4 years ago
0
requirements.txt fails to install the python libraries required
#148
Shalsh23
closed
4 years ago
8
Patch python requirements
#147
Shalsh23
closed
4 years ago
0
Take email address for slurm as argument
#146
Shalsh23
closed
4 years ago
0
Update jena mirror
#145
Shalsh23
closed
4 years ago
0
Update the kb-owl-tools version downloaded
#144
Shalsh23
closed
4 years ago
0
Change jena mirror
#143
Shalsh23
closed
4 years ago
0
Make email address in SLURM submission an argument or environment variable
#142
hlapp
closed
4 years ago
0
Anatomical entities and qualities query fixes
#141
balhoff
closed
4 years ago
0
Create combinatorial entity x attribute similarity subsumers
#140
balhoff
opened
4 years ago
1
Revise presence/absence DOS-DP templates to align with updates in legacy pipeline
#139
balhoff
closed
4 years ago
0
Ensure loaded ontologies are consistent with updates to legacy pipeline
#138
balhoff
closed
4 years ago
0
Lower memory requirement. Update Monarch file locations. Fix column header.
#137
balhoff
closed
4 years ago
1
Ontologies tweak.
#136
balhoff
closed
4 years ago
0
Use reflexive relations for subsumers.
#135
balhoff
closed
4 years ago
0
Add mirror dependency.
#134
balhoff
closed
4 years ago
0
Phenoscape kb vocab update
#133
balhoff
closed
4 years ago
2
Faster subclass-closure query. Bugfixes.
#132
balhoff
closed
4 years ago
0
Filter anatomical entities defined in uberon, bspo, cl ontologies
#131
Shalsh23
closed
4 years ago
0
Shalsh patch
#130
Shalsh23
closed
4 years ago
0
Generate named partOf classes
#129
Shalsh23
closed
4 years ago
0
part_of.yaml pattern doesn't seem to be used
#128
balhoff
closed
4 years ago
1
Insert the time of beginning the build
#127
balhoff
closed
4 years ago
0
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