Use the kb.phenoscape v2 API

phenoscape / rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.

https://rphenoscape.phenoscape.org/

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Use the kb.phenoscape v2 API #209

Closed johnbradley closed 3 years ago

johnbradley commented 3 years ago

Add support for the v2 release of the kb.phenoscape API. Look into what needs to be changed so rphenoscape to be compatible with the API changes. The beta URL for testing the v2 API is https://dev.phenoscape.org/api/v2-beta. The weekly test is already running against the V2 beta API:

https://github.com/phenoscape/rphenoscape/blob/b668eb99c7fd29dc24a2ee6dd4c7f19a48926aca/.github/workflows/kb-beta-API-check.yaml#L68

johnbradley commented 3 years ago

Six tests currently fail when using the v2-beta API. Separate issues have been created: #210 #211 #212 #213 #214 #220

johnbradley commented 3 years ago

All the issues for v2-beta API support above have been addressed. Closing this issue.