Exclude PATO and ZP from anatomy_ontology_iris()

phenoscape / rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.

https://rphenoscape.phenoscape.org/

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Exclude PATO and ZP from anatomy_ontology_iris() #246

Closed johnbradley closed 2 years ago

johnbradley commented 2 years ago

With the dev v2-beta KB API new terms have been added that result in anatomy_ontology_iris() returning PATO("http://purl.obolibrary.org/obo/pato.owl) and ZP(http://purl.obolibrary.org/obo/zp.owl). Update this function to exclude these terms that are not anatomy but unexpectedly begin with "anatomical structure".

johnbradley commented 2 years ago

This is part of #243