phenoscape / rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
https://rphenoscape.phenoscape.org/
Other
5 stars 5 forks source link

dplyr warning message #262

Closed wdahdul closed 1 year ago

wdahdul commented 1 year ago
> nex <- get_ontotrace_data(taxon = c("Ictalurus", "Ameiurus"), entity = "fin spine")
> (m <- get_char_matrix(nex))

Warning message:
`select_()` was deprecated in dplyr 0.7.0.
ℹ Please use `select()` instead.
ℹ The deprecated feature was likely used in the dplyr package.
  Please report the issue at <https://github.com/tidyverse/dplyr/issues>.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated. 

> lifecycle::last_lifecycle_warnings()

[[1]]
<warning/lifecycle_warning_deprecated>
Warning:
`select_()` was deprecated in dplyr 0.7.0.
ℹ Please use `select()` instead.
ℹ The deprecated feature was likely used in the dplyr package.
  Please report the issue at <https://github.com/tidyverse/dplyr/issues>.
---
Backtrace:
 1. rphenoscape::get_char_matrix(nex)
 5. dplyr::select_(., drop)
 6. dplyr:::lazy_deprec("select", hint = FALSE)
hlapp commented 1 year ago

This has been fixed in RNeXML (see ropensci/RNeXML#250 and ropensci/RNeXML#253). However, the changes haven't been released to CRAN yet. (If you want you could upgrade RNeXML from GitHub.)

@cboettig any ETA on when the next RNeXML release will be made?

cboettig commented 1 year ago

submitted. :crossed_fingers:

cboettig commented 1 year ago

on cran now