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phenoscape / rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
https://rphenoscape.phenoscape.org/
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R docs need regenerating for some functions #285

Closed hlapp closed 1 month ago

hlapp commented 4 months ago

Apparently the changes from #281 weren't fully propagated to documentation. R CHECK yields the following warnings:

* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'get_term_iri.Rd':
get_term_iri
  Code: function(text, as, exactOnly = FALSE, nomatch = NA,
                 includeRelatedSynonyms = FALSE, verbose = FALSE)
  Docs: function(text, as, exactOnly = FALSE, nomatch = NA, verbose =
                 FALSE)
  Argument names in code not in docs:
    includeRelatedSynonyms
  Mismatches in argument names:
    Position: 5 Code: includeRelatedSynonyms Docs: verbose

Codoc mismatches from Rd file 'terms.Rd':
taxon_info
  Code: function(term, includeRelatedSynonyms = FALSE, verbose = FALSE)
  Docs: function(term, verbose = FALSE)
  Argument names in code not in docs:
    includeRelatedSynonyms
  Mismatches in argument names:
    Position: 2 Code: includeRelatedSynonyms Docs: verbose