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phenoscape / rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
https://rphenoscape.phenoscape.org/
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Update potentially invalid URLs #286

Open hlapp opened 2 months ago

hlapp commented 2 months ago

R CMD check issues the following warnings related to URLs found in the documentation:

Found the following (possibly) invalid URLs:
  URL: http://purl.obolibrary.org/obo/IAO_0000591
    From: man/add_provenance_record.Rd
    Status: 500
    Message: Internal Server Error
  URL: http://www.github.com/phenoscape/rphenoscape (moved to https://github.com/phenoscape/rphenoscape)
    From: inst/doc/rphenoscape.html
    Status: 200
    Message: OK
  URL: https://circleci.com/gh/phenoscape/rphenoscape (moved to https://app.circleci.com/pipelines/github/phenoscape/rphenoscape)
    From: README.md
    Status: 200
    Message: OK
  URL: https://docs.ropensci.org/RNeXML (moved to https://docs.ropensci.org/RNeXML/)
    From: inst/doc/rphenoscape.html
    Status: 200
    Message: OK
  URL: https://support.rstudio.com/hc/en-us/articles/360047157094-Managing-R-with-Rprofile-Renviron-Rprofile-site-Renviron-site-rsession-conf-and-repos-conf (moved to https://support.posit.co/hc/en-us/articles/360047157094-Managing-R-with-Rprofile-Renviron-Rprofile-site-Renviron-site-rsession-conf-and-repos-conf)
    From: README.md
    Status: 403
    Message: Forbidden