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phi-grib / flame

Modeling framework for eTRANSAFE project
GNU General Public License v3.0
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Conda environment dependencies #118

Closed BielStela closed 5 years ago

BielStela commented 5 years ago

The environment needs to be redefined to avoid the segfault in MacOS and the dependency availability in Windows. Linked to #22

BielStela commented 5 years ago

I created a new env without de Conda-forge channel the reproduce the old setup and everything worked fine again. This I the current env:

# packages in environment at /Users/phi/miniconda3/envs/flame_noforge:
#
# Name                    Version                   Build  Channel
appdirs                   1.4.3                     <pip>
asn1crypto                0.24.0                   py36_0  
atomicwrites              1.3.0                      py_0  
attrs                     18.2.0           py36h28b3542_0  
blas                      1.0                         mkl  
bzip2                     1.0.6                h1de35cc_5  
ca-certificates           2019.1.23                     0  
cairo                     1.14.12              hc4e6be7_4  
certifi                   2018.11.29               py36_0  
cffi                      1.11.5           py36h6174b99_1  
chardet                   3.0.4                    py36_1  
cheroot                   6.5.4                    py36_0  
cherrypy                  18.1.0                   py36_0  
contextlib2               0.5.5            py36hd66e5e7_0  
cryptography              2.5              py36ha12b0ac_0  
cycler                    0.10.0           py36hfc81398_0  
flame                     0.1                       <pip>
fontconfig                2.13.0               h5d5b041_1  
freetype                  2.9.1                hb4e5f40_0  
gettext                   0.19.8.1             h15daf44_3  
glib                      2.56.2               hd9629dc_0  
icu                       58.2                 h4b95b61_1  
idna                      2.8                      py36_0  
intel-openmp              2019.1                      144  
jaraco.functools          1.20                     py36_0  
jpeg                      9b                   he5867d9_2  
kiwisolver                1.0.1            py36h0a44026_0  
libboost                  1.65.1               hcc95346_4  
libcxx                    4.0.1                hcfea43d_1  
libcxxabi                 4.0.1                hcfea43d_1  
libedit                   3.1.20181209         hb402a30_0  
libffi                    3.2.1                h475c297_4  
libgfortran               3.0.1                h93005f0_2  
libiconv                  1.15                 hdd342a3_7  
libpng                    1.6.36               ha441bb4_0  
libtiff                   4.0.10               hcb84e12_2  
libxml2                   2.9.9                hab757c2_0  
matplotlib                3.0.2            py36h54f8f79_0  
mkl                       2019.1                      144  
mkl_fft                   1.0.10           py36h5e564d8_0  
mkl_random                1.0.2            py36h27c97d8_0  
more-itertools            5.0.0                    py36_0  
ncurses                   6.1                  h0a44026_1  
nonconformist             1.2.5                     <pip>
numpy                     1.15.4           py36hacdab7b_0  
numpy-base                1.15.4           py36h6575580_0  
olefile                   0.46                     py36_0  
openssl                   1.1.1a               h1de35cc_0  
pandas                    0.24.1           py36h0a44026_0  
patsy                     0.5.1                    py36_0  
pcre                      8.42                 h378b8a2_0  
pillow                    5.4.1            py36hb68e598_0  
pip                       19.0.1                   py36_0  
pixman                    0.36.0               h1de35cc_0  
pluggy                    0.8.1                    py36_0  
portend                   2.3                      py36_0  
py                        1.7.0                    py36_0  
py-boost                  1.65.1           py36h1439ea1_4  
pycparser                 2.19                     py36_0  
pyopenssl                 19.0.0                   py36_0  
pyparsing                 2.3.1                    py36_0  
pysocks                   1.6.8                    py36_0  
pytest                    4.2.1                    py36_0  
python                    3.6.8                haf84260_0  
python-dateutil           2.7.5                    py36_0  
pytz                      2018.9                   py36_0  
pyyaml                    3.13             py36h1de35cc_0  
rdkit                     2018.09.1.0      py36h6adbef8_1    rdkit
readline                  7.0                  h1de35cc_5  
repoze.lru                0.7                      py36_0  
requests                  2.21.0                   py36_0  
routes                    2.4.1                    py36_0  
scikit-learn              0.20.2           py36h27c97d8_0  
scipy                     1.2.1            py36h1410ff5_0  
setuptools                40.8.0                   py36_0  
simplejson                3.16.0           py36h1de35cc_0  
six                       1.12.0                   py36_0  
sqlite                    3.26.0               ha441bb4_0  
standardiser              0.1.7                     <pip>
statsmodels               0.9.0            py36h1d22016_0  
tempora                   1.14                     py36_0  
tk                        8.6.8                ha441bb4_0  
tornado                   5.1.1            py36h1de35cc_0  
urllib3                   1.24.1                   py36_0  
wheel                     0.32.3                   py36_0  
xz                        5.2.4                h1de35cc_4  
yaml                      0.1.7                hc338f04_2  
zc.lockfile               1.3.0            py36h28b3542_0  
zlib                      1.2.11               h1de35cc_3  
zstd                      1.3.7                h5bba6e5_0

I will roll back the env.yml (in #117 ) to the defaults to fix the Windows issue with libfortran.

BielStela commented 5 years ago

(OSX) All tests passed with default channel in env

(flame) MacBook-Air-5:flame phi$ pytest
================================================= test session starts ==================================================
platform darwin -- Python 3.7.1, pytest-4.3.0, py-1.7.0, pluggy-0.8.1
rootdir: /Users/phi/github/flame, inifile:
collected 9 items                                                                                                      

flame/tests/test_classification.py .                                                                             [ 11%]
flame/tests/test_classification_conformal.py .                                                                   [ 22%]
flame/tests/test_manage.py .                                                                                     [ 33%]
flame/tests/test_regression.py .                                                                                 [ 44%]
flame/tests/test_regression_conformal.py .                                                                       [ 55%]
flame/tests/test_utils.py ....                                                                                   [100%]

======================================== 9 passed, 2 warnings in 27.43 seconds =========================================