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philarevalo / PopCOGenT

Microbial Populations as Clusters Of Gene Transfer
GNU General Public License v3.0
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feat: allow import as a snakemake module #39

Open Hocnonsense opened 11 months ago

Hocnonsense commented 11 months ago

Changes:

  1. new snakemake module style:
    1. specify input via ls *.fa > genome.fasta.ls
    2. import "src/PopCOGenT/PopCOGenT.smk" as a module with params specified
    3. expect output: genome-length_bias-0.000355362.cluster.tsv
  2. update python functions
  3. remove dependences on infomap