Closed philipc closed 2 years ago
As part of adding these comments, I have discovered that the algorithm is actually Needleman-Wunsch (global alignment) modified with overhang handling, not Smith-Waterman (local alignment). See https://github.com/broadinstitute/gatk/issues/6576.
As part of adding these comments, I have discovered that the algorithm is actually Needleman-Wunsch (global alignment) modified with overhang handling, not Smith-Waterman (local alignment). See https://github.com/broadinstitute/gatk/issues/6576.