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philipc / gkl-rs

Rust bindings for Intel Genomics Kernel Library (GKL)
Apache License 2.0
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smithwaterman: add Rust implementation #9

Closed philipc closed 2 years ago

philipc commented 2 years ago

Also some other small fixes.

Performance difference compared to the C++ implementation (but I'm not sure how relevant the data used for the benchmark is):

align_i32x8             time:   [32.800 ms 32.834 ms 32.870 ms]                        
                        change: [-15.726% -15.382% -15.037%] (p = 0.00 < 0.05)
                        Performance has improved.

align_i32x16            time:   [34.820 ms 34.859 ms 34.898 ms]                         
                        change: [-9.8908% -9.2732% -8.8869%] (p = 0.00 < 0.05)
                        Performance has improved.