The downstream analysis is more difficult because the returned bed file is non-disjoint. Would be more convenient to return peaks which do not overlap (listing in metadata all gene ids the peak could belong to if there are multiple genes with overlapping annotation).
The downstream analysis is more difficult because the returned bed file is non-disjoint. Would be more convenient to return peaks which do not overlap (listing in metadata all gene ids the peak could belong to if there are multiple genes with overlapping annotation).