NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Any suggestion to improve the run time of ngmlr jobs. An average job run time is 35-40h, I have tried to increase the number of threads also, tried to use RAM disk (to reduce I/O).
thanks
-bk
Any suggestion to improve the run time of ngmlr jobs. An average job run time is 35-40h, I have tried to increase the number of threads also, tried to use RAM disk (to reduce I/O). thanks -bk