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philres / ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
MIT License
287 stars 40 forks source link

A suggestion ! #57

Open xgnusr opened 5 years ago

xgnusr commented 5 years ago

You could incorporate nvidia cuda code to increase execution speed ... It's just a suggestion

fritzsedlazeck commented 5 years ago

Thanks. We did that in our short read mapper (ngm). However, this is not trivial and unfortunately we lack the time to do it right... Thanks Fritz

xgnusr commented 5 years ago

Thanks to you for your great tool !!

bkallow commented 2 years ago

Thanks. We did that in our short read mapper (ngm). However, this is not trivial and unfortunately we lack the time to do it right... Thanks Fritz

I am not familiar with running Nvidia cuda ngm. if you have a procedure will you guide me?