Convex Gap-cost alignment

philres / ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

MIT License

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Convex Gap-cost alignment #87

Open csuzhang opened 4 years ago

csuzhang commented 4 years ago

HI: It seems that the main function in ConvexAlign.cpp and ConvexAlignFast.cpp doesn't work, so could you give a general example for the SingleAlign function?

Thanks!