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philres / ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
MIT License
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Segmentation fault #97

Open zjwang6 opened 3 years ago

zjwang6 commented 3 years ago

Hello, I run "ngmlr -x pacbio -r ref.fa -q query.fasta -o query.sam", and got error "Segmentation fault (core dumped)". I have been split the fasta file into many part, also can't work. Could you give me some advice. The ngmlr is ngmlr-0.2.8

Thank you

zjwang6 commented 3 years ago

Just changed ngmlr-0.2.7，it's ok.

zhangwenda0518 commented 2 years ago

I encountered the same problem, Segmentation fault (core dumped)，when I used ngmlr-0.2.8, , and I switched to ngmlr-0.2.7, my data was running normally.